CHAPTER OUTLINE 1.1 Introduction .....................................................................................................................................4 1.2 Basic Epigenetic Mechanisms ...........................................................................................................6 1.2.1 DNA Methylation .......................................................................................................... 7 1.2.2 DNA Demethylation ...................................................................................................... 8 1.2.3 Histone Modifications ................................................................................................... 8 1.2.3.1 Histone Acetylation and Deacetylation.......................................................................8 1.2.3.2 Histone Phosphorylation .........................................................................................10 1.2.3.3 Histone Methylation and Demethylation ..................................................................10 1.2.3.4 Chromatin-Remodeling Complexes and Histone Variants .........................................11 1.2.4 Noncoding RNAs ........................................................................................................ 11 1.3 Epigenetic (Re)Programming........................................................................................................... 12 1.3.1 Epigenetic Asymmetry in the Zygote............................................................................. 12 1.3.2 Reprogramming in the Germline .................................................................................. 14 1.3.3 Induced Pluripotency.................................................................................................. 14 1.4 Genomic Imprinting as a Model of Epigenetic Silencing ................................................................... 15 1.5 Dosage Compensation in Mammals ................................................................................................. 17 1.6 PEV in Drosophila .......................................................................................................................... 19 1.7 Transgenerational and Intergenerational Epigenetic Inheritance ....................................................... 20 1.8 Epigenetics and Disease................................................................................................................. 23 1.8.1 Selected Monogenetic Diseases ................................................................................... 23 1.8.2 Selected Neurodegenerative Diseases........................................................................... 26 1.8.3 Selected Autoimmune Diseases ................................................................................... 27 References .......................................................................................................................................... 28……
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